#!/bin/tcsh
#
# Purpose
# -------
# Set up the CSIRO Mk3L climate system model, in stand-alone
# atmosphere mode, coupled to CABLE, to be run on VU.
#
# Usage
# -----
# ./setup_vu_cable
# ( followed by
# qsub run_vu_cable )
#
# History
# -------
# 2009 Sep 23   Bernard Pak     Original version for VU.
# 2009 Dec 16   Bernard Pak     Modified for committing to SVN repository
#
# Note
# ----
# *** Remember to check cable_mk3l.nml for output frequency ***

# Create a temporary directory, if it doesn't already exist, into which to copy
# the model output at the end. Delete the contents if it does already exist.
set TMP_DIR = ../../run2/
if (-e $TMP_DIR) /bin/rm $TMP_DIR/*
if (! -e $TMP_DIR) mkdir $TMP_DIR

# Copy the run script to the run directory
cp ./runCNP  $TMP_DIR

# Copy the model executable to the run directory
cp ../bin/model $TMP_DIR

# Copy the control file to the run directory
cp ../control/input_atm_cable_1yr $TMP_DIR/input

# Copy the CABLE control file to the run directory
cp ../control/cable_mk3l.nml $TMP_DIR

# Copy the restart file to the run directory
cp ../data/atmosphere/restart/csiro_rest.start $TMP_DIR/rest.start

# Copy the CABLE restart file to the run directory
cp ../data/CABLE/restart/csiro_restart_out.nc $TMP_DIR/restart_out.nc

# Copy the basic data files to the run directory
cp ../data/atmosphere/basic/* $TMP_DIR

# Copy the basic CABLE data files to the run directory
cp ../data/CABLE/surface_data/*  $TMP_DIR

# Copy the CO2 radiative data file for 280ppm to the run directory
cp ../data/atmosphere/co2/co2_data.280ppm.18l $TMP_DIR/co2_data.18l

# Copy the sea surface temperatures to the run directory
cp ../data/atmosphere/sst/ssta.nc_default $TMP_DIR/ssta.nc

# Copy the ocean currents to the run directory
cp ../data/atmosphere/currents/ocuv.nc_default $TMP_DIR/ocuv.nc

# Copy the monthly albedo data (if used) to the run directory
cp ../data/atmosphere/nsib/albedo.nc $TMP_DIR

# Change to the run directory
cd $TMP_DIR

# Set model year number to 00001
echo '00001' > year